Genome Explorer: Limosilactobacillus fermentum 3872 (SEQF9215.3)
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Limosilactobacillus fermentum 3872 (SEQF9215.3)
NCBI Annotation for SEQF9215.3
| Genome selected: Limosilactobacillus fermentum 3872 | |||
| Contigs: | 2 | Bases: | 2330492 bps |
| CDS: | 2111 | rRNA: | 15 |
| tmRNA: | 0 | tRNA: | 58 |
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| # | Molecule | PID | Genome Viewer |
NA (Length)(Seq) |
AA (Length)(Seq) |
Range | Gene | Gene Product |
|---|---|---|---|---|---|---|---|---|
| 2001 | CP011536.1 | AKM52250.1 | open | 642 [NA] | 213 [AA] | 1183241-1183882 | N573_005910 | galactoside O-acetyltransferase |
| 2002 | CP011536.1 | AKM52251.1 | open | 543 [NA] | 180 [AA] | 1279940-1280482 | N573_006405 | PadR family transcriptional regulator |
| 2003 | CP011536.1 | AKM52252.1 | open | 534 [NA] | 177 [AA] | 1280574-1281107 | N573_006410 | phenolic acid decarboxylase padC |
| 2004 | CP011536.1 | AKM52253.1 | open | 750 [NA] | 249 [AA] | 1301955-1302704 | N573_006520 | integrase |
| 2005 | CP011536.1 | AKM52254.1 | open | 648 [NA] | 215 [AA] | 1302827-1303474 | N573_006525 | transposase |
| 2006 | CP011536.1 | AKM52255.1 | open | 393 [NA] | 130 [AA] | 1313974-1314366 | N573_006575 | glyoxalase |
| 2007 | CP011536.1 | AKM52256.1 | open | 843 [NA] | 280 [AA] | 1320412-1321254 | N573_006610 | integrase |
| 2008 | CP011536.1 | AKM52257.1 | open | 3663 [NA] | 1220 [AA] | 1346979-1350641 | N573_006750 | nitrate reductase |
| 2009 | CP011536.1 | AKM52258.1 | open | 498 [NA] | 165 [AA] | 1353992-1354489 | N573_006770 | cyclic pyranopterin monophosphate synthase accessory protein |
| 2010 | CP011536.1 | AKM52259.1 | open | 996 [NA] | 331 [AA] | 1366048-1367043 | N573_006860 | peptide ABC transporter substrate-binding protein |
| 2011 | CP011536.1 | AKM52260.1 | open | 885 [NA] | 294 [AA] | 1371458-1372342 | N573_006890 | multidrug transporter |
| 2012 | CP011536.1 | AKM52261.1 | open | 423 [NA] | 140 [AA] | 1396678-1397100 | N573_007015 | 3-beta hydroxysteroid dehydrogenase |
| 2013 | CP011536.1 | AKM52262.1 | open | 1443 [NA] | 480 [AA] | 1398326-1399768 | N573_007025 | multidrug MFS transporter |
| 2014 | CP011536.1 | AKM52263.1 | open | 1392 [NA] | 463 [AA] | 1417832-1419223 | N573_007105 | multidrug transporter |
| 2015 | CP011536.1 | AKM52264.1 | open | 876 [NA] | 291 [AA] | 1451406-1452281 | N573_007260 | pseudouridine synthase |
| 2016 | CP011536.1 | AKM52265.1 | open | 1140 [NA] | 379 [AA] | 1464312-1465451 | N573_007330 | ATPase |
| 2017 | CP011536.1 | AKM52266.1 | open | 930 [NA] | 309 [AA] | 1487876-1488805 | N573_007425 | phosphate ABC transporter permease |
| 2018 | CP011536.1 | AKM52267.1 | open | 1374 [NA] | 457 [AA] | 1489983-1491356 | N573_007435 | RNA methyltransferase |
| 2019 | CP011536.1 | AKM52268.1 | open | 642 [NA] | 213 [AA] | 1539997-1540638 | N573_007665 | thiamine pyrophosphokinase |
| 2020 | CP011536.1 | AKM52269.1 | open | 399 [NA] | 132 [AA] | 1564901-1565299 | N573_007805 | death-on-curing protein |
| 2021 | CP011536.1 | AKM52270.2 | open | 1668 [NA] | 555 [AA] | 1586000-1587667 | N573_007930 | capsid protein |
| 2022 | CP011536.1 | AKM52271.1 | open | 462 [NA] | 153 [AA] | 1591017-1591478 | N573_007950 | terminase |
| 2023 | CP011536.1 | AKM52272.2 | open | 993 [NA] | 330 [AA] | 1601451-1602443 | N573_008040 | Abortive infection bacteriophage resistance protein |
| 2024 | CP011536.1 | AKM52273.1 | open | 513 [NA] | 170 [AA] | 1635003-1635515 | N573_008210 | nicotinic acid mononucleotide adenylyltransferase |
| 2025 | CP011536.1 | AKM52274.1 | open | 1116 [NA] | 371 [AA] | 1663569-1664684 | N573_008380 | dihydropteroate synthase |
| 2026 | CP011536.1 | AKM52275.1 | open | 450 [NA] | 149 [AA] | 1697310-1697759 | N573_008550 | acyl-CoA hydrolase |
| 2027 | CP011536.1 | AKM52276.1 | open | 2217 [NA] | 738 [AA] | 1703411-1705627 | N573_008585 | ribonucleoside-triphosphate reductase |
| 2028 | CP011536.1 | AKM52277.1 | open | 1650 [NA] | 549 [AA] | 1742960-1744609 | N573_008805 | hypothetical protein |
| 2029 | CP011536.1 | AKM52278.2 | open | 1752 [NA] | 583 [AA] | 1761977-1763728 | N573_008885 | yafL 2 |
| 2030 | CP011536.1 | AKM52279.2 | open | 1824 [NA] | 607 [AA] | 1766786-1768609 | N573_008905 | lytG 1 |
| 2031 | CP011536.1 | AKM52280.1 | open | 1320 [NA] | 439 [AA] | 1791346-1792665 | N573_009035 | helicase |
| 2032 | CP011536.1 | AKM52281.1 | open | 504 [NA] | 167 [AA] | 1811277-1811780 | N573_009140 | prolyl-tRNA synthetase |
| 2033 | CP011536.1 | AKM52282.1 | open | 1095 [NA] | 364 [AA] | 1814879-1815973 | N573_009155 | membrane protein |
| 2034 | CP011536.1 | AKM52283.1 | open | 1563 [NA] | 520 [AA] | 1839701-1841263 | N573_009285 | terminase |
| 2035 | CP011536.1 | AKM52284.2 | open | 1266 [NA] | 421 [AA] | 1841292-1842557 | N573_009290 | portal protein |
| 2036 | CP011536.1 | AKM52285.1 | open | 1074 [NA] | 357 [AA] | 1863190-1864263 | N573_009385 | calcium ABC transporter ATPase |
| 2037 | CP011536.1 | AKM52286.1 | open | 804 [NA] | 267 [AA] | 1875596-1876399 | N573_009440 | cobalt ABC transporter ATP-binding protein |
| 2038 | CP011536.1 | AKM52287.1 | open | 831 [NA] | 276 [AA] | 1877231-1878061 | N573_009450 | cobalt transporter ATP-binding subunit |
| 2039 | CP011536.1 | AKM52288.1 | open | 381 [NA] | 126 [AA] | 1934408-1934788 | N573_009800 | transcriptional regulator |
| 2040 | CP011536.1 | AKM52289.1 | open | 657 [NA] | 218 [AA] | 1944065-1944721 | N573_009845 | uracil-DNA glycosylase |
| 2041 | CP011536.1 | AKM52290.1 | open | 1011 [NA] | 336 [AA] | 1970976-1971986 | N573_009960 | alcohol dehydrogenase |
| 2042 | CP011536.1 | AKM52291.2 | open | 831 [NA] | 276 [AA] | 2021922-2022752 | N573_010210 | nudG |
| 2043 | CP011536.1 | AKM52292.1 | open | 1611 [NA] | 536 [AA] | 2035008-2036618 | N573_010265 | 1-deoxy-D-xylulose-5-phosphate synthase |
| 2044 | CP011536.1 | AKM52293.1 | open | 876 [NA] | 291 [AA] | 2057018-2057893 | N573_010350 | transporter |
| 2045 | CP011536.1 | AKM52294.1 | open | 285 [NA] | 94 [AA] | 2068907-2069191 | N573_010395 | transposase |
| 2046 | CP011536.1 | AKM52295.1 | open | 912 [NA] | 303 [AA] | 2087385-2088296 | N573_010475 | prolyl aminopeptidase |
| 2047 | CP011536.1 | AKM52296.1 | open | 429 [NA] | 142 [AA] | 2095294-2095722 | N573_010505 | ribonucleotide reductase |
| 2048 | CP011536.1 | AKM52297.1 | open | 876 [NA] | 291 [AA] | 2106693-2107568 | N573_010555 | fructokinase |
| 2049 | CP011536.1 | AKM52298.1 | open | 648 [NA] | 215 [AA] | 2117052-2117699 | N573_010605 | transposase |
| 2050 | CP011536.1 | AKM52299.1 | open | 750 [NA] | 249 [AA] | 2117822-2118571 | N573_010610 | integrase |
| 2051 | CP011536.1 | AKM52300.1 | open | 1938 [NA] | 645 [AA] | 2133157-2135094 | N573_010685 | sodium:proton antiporter |
| 2052 | CP011536.1 | AKM52301.1 | open | 819 [NA] | 272 [AA] | 2142278-2143096 | N573_010735 | peptidase |
| 2053 | CP011536.1 | AKM52302.1 | open | 576 [NA] | 191 [AA] | 2150245-2150820 | N573_010765 | transposase |
| 2054 | CP011536.1 | AKM52303.1 | open | 840 [NA] | 279 [AA] | 2220256-2221095 | N573_011085 | conjugal transfer protein |
| 2055 | CP011536.1 | AKM52304.1 | open | 243 [NA] | 80 [AA] | 2229501-2229743 | N573_011125 | transposase |
| 2056 | CP011536.1 | AKM52305.1 | open | 603 [NA] | 200 [AA] | 2273279-2273881 | N573_011355 | transcriptional regulator |
| 2057 | CP011536.1 | AKM52306.1 | open | 612 [NA] | 203 [AA] | 2283377-2283988 | N573_011400 | signal peptidase |
| 2058 | CP011536.1 | AKM52307.1 | open | 1422 [NA] | 473 [AA] | 2289376-2290797 | N573_011420 | gamma-aminobutyrate permease |
| 2059 | CP011536.1 | ALQ81393.1 | open | 285 [NA] | 94 [AA] | 58780-59064 | N573_000240 | putative dihydroxyacetone kinase regulator |
| 2060 | CP011536.1 | ALQ81394.1 | open | 444 [NA] | 147 [AA] | 188162-188605 | N573_000845 | Transposase, IS30 family |
| 2061 | CP011536.1 | ALQ81395.1 | open | 879 [NA] | 292 [AA] | 227650-228528 | N573_001035 | allantoate amidohydrolase |
| 2062 | CP011536.1 | ALQ81396.1 | open | 291 [NA] | 96 [AA] | 307383-307673 | N573_002911 | transposase, IS605 OrfB family |
| 2063 | CP011536.1 | ALQ81397.1 | open | 147 [NA] | 48 [AA] | 339063-339209 | N573_003231 | rpmGA 1 |
| 2064 | CP011536.1 | ALQ81398.1 | open | 462 [NA] | 153 [AA] | 751579-752040 | N573_RS11675 | hypothetical protein |
| 2065 | CP011536.1 | ALQ81399.1 | open | 396 [NA] | 131 [AA] | 752059-752454 | N573_003660 | bifunctional HTH-domain containing protein/aminotransferase |
| 2066 | CP011536.1 | ALQ81400.1 | open | 1095 [NA] | 364 [AA] | 753853-754947 | N573_003675 | Phage replication initiation protein |
| 2067 | CP011536.1 | ALQ81401.1 | open | 774 [NA] | 257 [AA] | 763499-764272 | N573_007761 | endA 1 |
| 2068 | CP011536.1 | ALQ81402.1 | open | 849 [NA] | 282 [AA] | 765488-766336 | N573_003765 | RNA polymerase sigma factor RpoD |
| 2069 | CP011536.1 | ALQ81403.1 | open | 2259 [NA] | 752 [AA] | 815817-818075 | N573_004055 | topB 1 |
| 2070 | CP011536.1 | ALQ81404.1 | open | 3084 [NA] | 1027 [AA] | 824565-827648 | N573_004090 | traG 1 |
| 2071 | CP011536.1 | ALQ81405.1 | open | 2484 [NA] | 827 [AA] | 827654-830137 | N573_004095 | hypothetical protein |
| 2072 | CP011536.1 | ALQ81406.1 | open | 1218 [NA] | 405 [AA] | 1311318-1312535 | N573_006560 | chromosome segregation protein SMC |
| 2073 | CP011536.1 | ALQ81407.1 | open | 171 [NA] | 56 [AA] | 1382410-1382580 | N573_014301 | Virus attachment protein p12 family protein |
| 2074 | CP011536.1 | ALQ81408.1 | open | 945 [NA] | 314 [AA] | 1573910-1574854 | N573_007870 | Collagen triple helix repeat (20 copies) |
| 2075 | CP011536.1 | ALQ81409.1 | open | 5520 [NA] | 1839 [AA] | 1849797-1855316 | N573_009340 | MucBP domain protein |
| 2076 | CP011536.1 | ALQ81410.1 | open | 117 [NA] | 38 [AA] | 1880510-1880626 | N573_019541 | rpmJ |
| 2077 | CP011536.1 | ALQ81411.1 | open | 354 [NA] | 117 [AA] | 2159321-2159674 | N573_022291 | Transposase, IS30 family |
| 2078 | CP011536.1 | ALQ81412.1 | open | 135 [NA] | 44 [AA] | 2297199-2297333 | N573_023591 | rpmH |
| 2079 | CP011537.1 | ERJ54323.1 | open | 585 [NA] | 194 [AA] | 1663-2247 | N573_03380 | Pin-related site-specific recombinase/DNA invertase |
| 2080 | CP011537.1 | ERJ54324.1 | open | 2136 [NA] | 711 [AA] | 24345-26480 | N573_03235 | topoisomerase I |
| 2081 | CP011537.1 | ERJ54325.1 | open | 411 [NA] | 136 [AA] | 23928-24338 | N573_03240 | hypothetical protein |
| 2082 | CP011537.1 | ERJ54326.1 | open | 840 [NA] | 279 [AA] | 23074-23913 | N573_03245 | conjugal transfer protein |
| 2083 | CP011537.1 | ERJ54327.1 | open | 390 [NA] | 129 [AA] | 22666-23055 | N573_03250 | hypothetical protein |
| 2084 | CP011537.1 | ERJ54328.1 | open | 1551 [NA] | 516 [AA] | 21101-22651 | N573_03255 | conjugal transfer protein |
| 2085 | CP011537.1 | ERJ54330.1 | open | 471 [NA] | 156 [AA] | 20401-20871 | N573_03265 | conjugal transfer protein |
| 2086 | CP011537.1 | ERJ54331.1 | open | 369 [NA] | 122 [AA] | 20032-20400 | N573_03270 | thioredoxin |
| 2087 | CP011537.1 | ERJ54332.1 | open | 618 [NA] | 205 [AA] | 19428-20045 | N573_03275 | hypothetical protein |
| 2088 | CP011537.1 | ERJ54333.1 | open | 1158 [NA] | 385 [AA] | 18257-19414 | N573_03280 | peptidoglycan hydrolase |
| 2089 | CP011537.1 | ERJ54334.2 | open | 2019 [NA] | 672 [AA] | 14827-16845 | N573_03285 | conjugal transfer protein |
| 2090 | CP011537.1 | ERJ54335.1 | open | 660 [NA] | 219 [AA] | 14156-14815 | N573_03290 | conjugal transfer protein |
| 2091 | CP011537.1 | ERJ54336.1 | open | 363 [NA] | 120 [AA] | 13825-14187 | N573_03295 | conjugal transfer protein |
| 2092 | CP011537.1 | ERJ54337.1 | open | 336 [NA] | 111 [AA] | 13469-13804 | N573_03300 | conjugal transfer protein |
| 2093 | CP011537.1 | ERJ54338.1 | open | 615 [NA] | 204 [AA] | 12853-13467 | N573_03305 | hypothetical protein |
| 2094 | CP011537.1 | ERJ54339.1 | open | 312 [NA] | 103 [AA] | 12506-12817 | N573_03310 | hypothetical protein |
| 2095 | CP011537.1 | ERJ54340.1 | open | 2064 [NA] | 687 [AA] | 10358-12421 | N573_03315 | nickase |
| 2096 | CP011537.1 | ERJ54341.1 | open | 210 [NA] | 69 [AA] | 9878-10087 | N573_03320 | hypothetical protein |
| 2097 | CP011537.1 | ERJ54342.1 | open | 279 [NA] | 92 [AA] | 9577-9855 | N573_03325 | hypothetical protein |
| 2098 | CP011537.1 | ERJ54343.1 | open | 831 [NA] | 276 [AA] | 8663-9493 | N573_03330 | toxin zeta |
| 2099 | CP011537.1 | ERJ54344.1 | open | 273 [NA] | 90 [AA] | 8388-8660 | N573_03335 | epsilon-antitoxin |
| 2100 | CP011537.1 | ERJ54345.2 | open | 297 [NA] | 98 [AA] | 7808-8104 | N573_03340 | hypothetical protein |
| 2101 | CP011537.1 | ERJ54347.1 | open | 240 [NA] | 79 [AA] | 5870-6109 | N573_03350 | hypothetical protein |
| 2102 | CP011537.1 | ERJ54348.1 | open | 792 [NA] | 263 [AA] | 5007-5798 | N573_03355 | peptide transporter |
| 2103 | CP011537.1 | ERJ54349.1 | open | 453 [NA] | 150 [AA] | 4083-4535 | N573_03360 | hypothetical protein |
| 2104 | CP011537.1 | ERJ54350.1 | open | 285 [NA] | 94 [AA] | 3409-3693 | N573_03365 | damage-inducible protein J |
| 2105 | CP011537.1 | ERJ54351.1 | open | 627 [NA] | 208 [AA] | 2571-3197 | N573_03370 | hypothetical protein |
| 2106 | CP011537.1 | ERJ54353.1 | open | 1335 [NA] | 444 [AA] | 1-1335 | N573_03385 | pyridine nucleotide-disulfide oxidoreductase |
| 2107 | CP011537.1 | ERJ55057.1 | open | 1125 [NA] | 374 [AA] | 26821-27945 | N573_09710 | LtrC |
| 2108 | CP011537.1 | ETC79948.2 | open | 1419 [NA] | 472 [AA] | 16838-18256 | N573_0113285 | conjugal transfer protein |
| 2109 | CP011537.1 | KIL01710.1 | open | 1164 [NA] | 387 [AA] | 6670-7833 | N573_19670 | plasmid replication initiation protein |
| 2110 | CP011537.1 | KIL01711.1 | open | 216 [NA] | 71 [AA] | 26602-26817 | N573_19675 | hypothetical protein |
| 2111 | CP011537.1 | KIR12943.1 | open | 3168 [NA] | 1055 [AA] | 28656-31823 | N573_19680 | collagen-binding protein cbp |